Running The Connectome Analyzer

Move to the Connectome Analyzer folder and start it from the terminal:

./run_cma

Note

The GUI inherits its apperance from Ubuntu. If you have the “Ambiance” theme selected, the GUI will render with dark colors that might impair proper visualisation. You can bypass this either by selecting another Ubuntu’s appearance theme (System > Preferences > Appearance) or by executing:

env GTK2_RC_FILES=/usr/share/themes/Industrial/gtk-2.0/gtkrc ./run_cma

Choose the analysis tab and configure it as required by your experiment. Then run the analysis.

Analysis configuration

• Global network analysis configuration
• Subnetwork analysis configuration
• Local analysis configuration
• Extra features configurations

You can save and load your analysis configuration as pickle files using the appropriate buttons from the GUI.

Checking your results

For Global analysis, the results are directly shown in the terminal. For lower level analysis, the corrected multiple tests are saved in csv tables inside a “Results” folder. Additional images (when available) are also saved in this folder:

 ├── Project_directory
 │ │
 │ ├── Group1
 │ │
 │ ├── Group2
 │ │
 │ └── Results
 │   │
 │   ├── Analysis1_Results.csv
 │   ├── Analysis1_Results.png
 │   ├── Analysis2_Results.csv
 │   ├── Analysis2_Results.png
 │   ├── ...
...

Getting help

If you run into any problems or have any questions, you can contact [email protected] or post on the CMTK-users group.